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    BEE2 BR enhanced expression 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829806, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BEE2
    Official Full Name
    BR enhanced expression 2
    Primary source
    TAIR:AT4G36540
    Locus tag
    AT4G36540
    See related
    Araport:AT4G36540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AP22.3; AP22_3; BR enhanced expression 2
    Summary
    Encodes the brassinosteroid signaling component BEE2 (BR-ENHANCED EXPRESSION 2). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.
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    Genomic context

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    See BEE2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (17243583..17245296)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ARM repeat superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression2 interacting with increased leaf inclination1 binding bHLH1. Malinovsky FG, et al. Plant Physiol, 2014 Mar. PMID 24443525, Free PMC Article
    2. The bHLH proteins BEE and BIM positively modulate the shade avoidance syndrome in Arabidopsis seedlings. Cifuentes-Esquivel N, et al. Plant J, 2013 Sep. PMID 23763263
    3. LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins. Husbands A, et al. Nucleic Acids Res, 2007. PMID 17913740, Free PMC Article
    4. Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl. Oh E, et al. Elife, 2014 May 27. PMID 24867218, Free PMC Article
    5. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Heim MA, et al. Mol Biol Evol, 2003 May. PMID 12679534

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_119817.3
    NM_179177.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of innate immune response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    BR enhanced expression 2
    NP_195372.1
    • BR enhanced expression 2 (BEE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G18300.2); Has 2056 Blast hits to 2048 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 31; Plants - 2000; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_849508.1
    • BR enhanced expression 2 (BEE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G18300.1); Has 2103 Blast hits to 2095 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 34; Plants - 2033; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17243583..17245296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119817.3 → NP_195372.1  BR enhanced expression 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195372.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23226, Q3E9Q1, Q6YJU3, Q8LF81, Q8S3E4, Q93VJ4, Q940I6
      UniProtKB/TrEMBL
      A0A178URK0, A0A5S9XZ71
      Conserved Domains (1) summary
      cd18919
      Location:137 → 222
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    2. NM_179177.2 → NP_849508.1  BR enhanced expression 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849508.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XZ71
      Conserved Domains (1) summary
      smart00353
      Location:153 → 202
      HLH; helix loop helix domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93VJ4.1

    Gene LinkOut

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