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    oligomeric golgi complex subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840065, updated on 18-Sep-2024

    Summary

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    Official Full Name
    oligomeric golgi complex subunit
    Primary source
    TAIR:AT1G31780
    Locus tag
    AT1G31780
    See related
    Araport:AT1G31780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5M6.21; F5M6_21
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (11391199..11394748)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SWIB/MDM2 domain superfamily protein Neighboring gene miscRNA Neighboring gene ATP-binding cassette 14 Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene cytochrome P450, family 97, subfamily A, polypeptide 3 Neighboring gene Formin Homology 14 Neighboring gene acyl-CoA-binding protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis COG6 is essential for pollen tube growth and Golgi structure maintenance. Rui Q, et al. Biochem Biophys Res Commun, 2020 Jul 30. PMID 32499114
    2. Arabidopsis COG Complex Subunits COG3 and COG8 Modulate Golgi Morphology, Vesicle Trafficking Homeostasis and Are Essential for Pollen Tube Growth. Tan X, et al. PLoS Genet, 2016 Jul. PMID 27448097, Free PMC Article
    3. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis COG6 is essential for pollen tube growth and Golgi structure maintenance.
      Title: Arabidopsis COG6 is essential for pollen tube growth and Golgi structure maintenance.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102912.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within Golgi organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of Golgi transport complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    oligomeric golgi complex subunit
    NP_174458.2
    • CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11391199..11394748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102912.5 → NP_174458.2  oligomeric golgi complex subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174458.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NMI3, Q9C6R8
      UniProtKB/TrEMBL
      A0A5S9WHD8, A0A654EEJ0
      Conserved Domains (1) summary
      pfam06419
      Location:31 → 674
      COG6; Conserved oligomeric complex COG6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NMI3.1

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