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    tRNA/rRNA methyltransferase (SpoU) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827225, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tRNA/rRNA methyltransferase (SpoU) family protein
    Primary source
    TAIR:AT4G15520
    Locus tag
    AT4G15520
    See related
    Araport:AT4G15520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3800W; FCAALL.322
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (8862744..8864646)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Photosystem II reaction center PsbP family protein Neighboring gene pyruvate orthophosphate dikinase Neighboring gene EamA-like transporter family Neighboring gene PH-response transcription factor Neighboring gene indole-3-acetate beta-D-glucosyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117642.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA methylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNA/rRNA methyltransferase (SpoU) family protein
    NP_193287.1
    • tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 7549 Blast hits to 7548 proteins in 2062 species: Archae - 19; Bacteria - 6000; Metazoa - 86; Fungi - 2; Plants - 92; Viruses - 0; Other Eukaryotes - 1350 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8862744..8864646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117642.4 → NP_193287.1  tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193287.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3U4, Q38889, Q8GYT1
      Conserved Domains (1) summary
      cd18096
      Location:6 → 146
      SpoU-like; SAM-dependent rRNA or tRNA methylase related to SpoU
    Nucleotide Protein
    Heading Accession and Version

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