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    tRNA-splicing ligase, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816453, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tRNA-splicing ligase, putative (DUF239)
    Primary source
    TAIR:AT2G19360
    Locus tag
    AT2G19360
    See related
    Araport:AT2G19360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27F23.16; F27F23_16
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (8378664..8383374)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Oligosaccharyltransferase complex/magnesium transporter family protein Neighboring gene ncRNA Neighboring gene transmembrane protein (DUF872) Neighboring gene Myb/SANT-like DNA-binding domain protein Neighboring gene RNA recognition motif (RRM)-containing protein Neighboring gene zinc ion binding protein Neighboring gene serine/arginine repetitive matrix protein Neighboring gene microRNA ath-MIR5632 precursor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNA-splicing ligase, putative (DUF239)
    NP_179526.2
    • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 1 (TAIR:AT2G17750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8378664..8383374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127493.2 → NP_179526.2  tRNA-splicing ligase, putative (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179526.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4ISH3
      Conserved Domains (2) summary
      pfam03080
      Location:183 → 419
      DUF239; Domain of unknown function (DUF239)
      pfam14365
      Location:49 → 164
      DUF4409; Domain of unknown function (DUF4409)
    Nucleotide Protein
    Heading Accession and Version

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