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    glycosyl hydrolase family 35 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816174, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glycosyl hydrolase family 35 protein
    Primary source
    TAIR:AT2G16730
    Locus tag
    AT2G16730
    See related
    Araport:AT2G16730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    beta-galactosidase 13; BGAL13; T24I21.14; T24I21_14
    Summary
    putative beta-galactosidase (BGAL13 gene)
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    18
    Sequence:
    Chromosome: 2; NC_003071.7 (7261783..7266346, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene myb domain protein 7 Neighboring gene ubiquitin-conjugating enzyme 29 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of beta-galactosidase and beta-xylosidase genes during microspore and pollen development. Hrubá P, et al. Planta, 2005 Apr. PMID 15517348
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_127225.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-galactosidase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase family 35 protein
    NP_179264.2
    • glycosyl hydrolase family 35 protein; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 11 (TAIR:AT4G35010.1); Has 2592 Blast hits to 2188 proteins in 502 species: Archae - 15; Bacteria - 1202; Metazoa - 413; Fungi - 220; Plants - 636; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7261783..7266346 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127225.3 → NP_179264.2  glycosyl hydrolase family 35 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179264.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SCU9, Q9SLE5
      UniProtKB/TrEMBL
      A0A178VXE0, A0A7G2E9Y1
      Conserved Domains (1) summary
      PLN03059
      Location:44 → 842
      PLN03059; beta-galactosidase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCU9.1

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