U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Vacuolar calcium-binding protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837760, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Vacuolar calcium-binding protein-like protein
    Primary source
    TAIR:AT1G12080
    Locus tag
    AT1G12080
    See related
    Araport:AT1G12080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12F1.4; F12F1_4
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (4084162..4085185)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Immunoglobulin E-set superfamily protein Neighboring gene extensin-like protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Transcriptional Induction of Two Genes for CCaPs, Novel Cytosolic Proteins, in Arabidopsis thaliana in the Dark. Ide Y, et al. Plant Cell Physiol, 2007 Jan. PMID 17145720
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_101080.2
    NM_179319.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_positive_effect cellular response to gibberellin stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect cellular response to sucrose starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to absence of light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_negative_effect response to calcium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to glucose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to mannitol IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_negative_effect response to metal ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_negative_effect response to molecule of bacterial origin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to salt IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to sorbitol IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Vacuolar calcium-binding protein-like protein
    NP_563898.1
    • Vacuolar calcium-binding protein-related; Has 7161 Blast hits to 3135 proteins in 433 species: Archae - 55; Bacteria - 867; Metazoa - 2008; Fungi - 476; Plants - 327; Viruses - 233; Other Eukaryotes - 3195 (source: NCBI BLink).
    NP_849650.1
    • Vacuolar calcium-binding protein-related; BEST Arabidopsis thaliana protein match is: Vacuolar calcium-binding protein-related (TAIR:AT1G62480.1); Has 21609 Blast hits to 9169 proteins in 1089 species: Archae - 145; Bacteria - 3596; Metazoa - 6157; Fungi - 1827; Plants - 760; Viruses - 333; Other Eukaryotes - 8791 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4084162..4085185
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179319.5 → NP_849650.1  Vacuolar calcium-binding protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849650.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65370, Q8LC93
      UniProtKB/TrEMBL
      A0A178WMP5

    2. NM_101080.2 → NP_563898.1  Vacuolar calcium-binding protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563898.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LC93
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65370.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.