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    FLA6 FASCICLIN-like arabinogalactan 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816574, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FLA6
    Official Full Name
    FASCICLIN-like arabinogalactan 6
    Primary source
    TAIR:AT2G20520
    Locus tag
    AT2G20520
    See related
    Araport:AT2G20520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FASCICLIN-like arabinogalactan 6; T13C7.11; T13C7_11
    Summary
    fasciclin-like arabinogalactan-protein 6 (Fla6)
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    Genomic context

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    See FLA6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (8840557..8841565)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene translocase inner membrane subunit 44-1 Neighboring gene pollen Ole e I family allergen protein Neighboring gene prohibitin 6 Neighboring gene mitochondrial editing factor 21 Neighboring gene HSP40/DnaJ peptide-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_127612.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FASCICLIN-like arabinogalactan 6
    NP_565475.1
    • FASCICLIN-like arabinogalactan 6 (FLA6); CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinoogalactan 9 (TAIR:AT1G03870.1); Has 1085 Blast hits to 1063 proteins in 208 species: Archae - 14; Bacteria - 391; Metazoa - 4; Fungi - 7; Plants - 614; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8840557..8841565
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127612.3 → NP_565475.1  FASCICLIN-like arabinogalactan 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565475.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C5Q5, Q9SIL7
      UniProtKB/TrEMBL
      A0A178VP93, A0A5S9WZW8
      Conserved Domains (1) summary
      pfam02469
      Location:47 → 184
      Fasciclin; Fasciclin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SIL7.2

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