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    PRK5 Leucine-rich repeat protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841483, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PRK5
    Official Full Name
    Leucine-rich repeat protein kinase family protein
    Primary source
    TAIR:AT1G50610
    Locus tag
    AT1G50610
    See related
    Araport:AT1G50610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11F12.7; F11F12_7; pollen receptor like kinase 5
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    Genomic context

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    See PRK5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (18742027..18744805)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RmlC-like cupins superfamily protein Neighboring gene scarecrow-like 5 Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene extracellular ligand-gated ion channel protein (DUF3537)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GRIM REAPER peptide binds to receptor kinase PRK5 to trigger cell death in Arabidopsis. Wrzaczek M, et al. EMBO J, 2015 Jan 2. PMID 25398910, Free PMC Article
    2. Actin-membrane interactions mediated by NETWORKED2 in Arabidopsis pollen tubes through associations with Pollen Receptor-Like Kinase 4 and 5. Duckney P, et al. New Phytol, 2017 Dec. PMID 28940405
    3. AtPRK2 promotes ROP1 activation via RopGEFs in the control of polarized pollen tube growth. Chang F, et al. Mol Plant, 2013 Jul. PMID 23024212, Free PMC Article
    4. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
    5. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_103943.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat protein kinase family protein
    NP_175476.2
    • Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G20190.1); Has 85511 Blast hits to 59788 proteins in 2042 species: Archae - 60; Bacteria - 3568; Metazoa - 17158; Fungi - 3134; Plants - 54121; Viruses - 151; Other Eukaryotes - 7319 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18742027..18744805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103943.3 → NP_175476.2  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175476.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LPT1
      UniProtKB/TrEMBL
      A0A178WJM5, A0A5S9WKS5
      Conserved Domains (4) summary
      PLN00113
      Location:90 → 589
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:115 → 137
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:44 → 87
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:381 → 625
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LPT1.1

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