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    AT hook motif DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842654, updated on 10-Oct-2024

    Summary

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    Official Full Name
    AT hook motif DNA-binding family protein
    Primary source
    TAIR:AT1G63480
    Locus tag
    AT1G63480
    See related
    Araport:AT1G63480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AHL12; AT-hook motif nuclear localized protein 12; F2K11.15; F2K11_15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (23539557..23542233, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene root hair specific 8 Neighboring gene AT hook motif DNA-binding family protein Neighboring gene glutathione peroxidase 8 Neighboring gene transcription factor jumonji (jmjC) domain-containing protein Neighboring gene kinase with tetratricopeptide repeat domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334095.1
    NM_001334096.1
    NM_001334097.1
    NM_001334098.1
    NM_001334099.1
    NM_105027.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AT hook motif DNA-binding family protein
    NP_176537.2
    • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956), A.T hook-like (InterPro:IPR020478); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT1G63470.1); Has 860 Blast hits to 856 proteins in 70 species: Archae - 0; Bacteria - 8; Metazoa - 47; Fungi - 33; Plants - 756; Viruses - 1; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23539557..23542233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334094.1 → NP_001322503.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LPN5, Q8VYP4
      UniProtKB/TrEMBL
      A0A654EKP6

    2. NM_105027.4 → NP_176537.2  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176537.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LPN5, Q8VYP4
      UniProtKB/TrEMBL
      A0A654EKP6
      Conserved Domains (1) summary
      pfam03479
      Location:163 → 275
      DUF296; Domain of unknown function (DUF296)

    3. NM_001334095.1 → NP_001322502.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFI5, A0A1P8AU89

    4. NM_001334097.1 → NP_001322500.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFI5, A0A1P8AU89

    5. NM_001334096.1 → NP_001322501.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFI5, A0A1P8AU89

    6. NM_001334099.1 → NP_001322498.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFI5, A0A1P8AU89

    7. NM_001334098.1 → NP_001322499.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFI5, A0A1P8AU89
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LPN5.1

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