EBS1 EMS-MUTAGENIZED BRI1 SUPPRESSOR 1 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: EBS1
Official Full Name: EMS-MUTAGENIZED BRI1 SUPPRESSOR 1
Primary source: TAIR:AT1G71220
Locus tag: AT1G71220
See related: Araport:AT1G71220
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: EMS-mutagenized bri1 suppressor 1; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE; UGGT
Summary: Encodes UDP-glucose:glycoprotein glucosyltransferase. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the presence of elf18, and EFR accumulation and signalling.
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Genomic context

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See EBS1 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 37

Sequence:: Chromosome: 1; NC_003070.9 (26841550..26851959)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

An S-ribonuclease binding protein EBS1 and brassinolide signaling are specifically required for Arabidopsis tolerance to bicarbonate.
Title: An S-ribonuclease binding protein EBS1 and brassinolide signaling are specifically required for Arabidopsis tolerance to bicarbonate.
a lack of UGGT activity alters plant vegetative development and impairs the response to several abiotic and biotic stresses.
Title: The UDP-glucose: glycoprotein glucosyltransferase (UGGT), a key enzyme in ER quality control, plays a significant role in plant growth as well as biotic and abiotic stress in Arabidopsis thaliana.
a missense mutation in the Arabidopsis EMS-mutagenized bri1 suppressor 3 (EBS3) gene suppresses a dwarf mutant, bri1-9, the phenotypes of which are caused by ER retention and ERAD of a brassinosteroid receptor, BRASSINOSTEROID-INSENSITIVE 1 (BR1)
Title: Evolutionarily conserved glycan signal to degrade aberrant brassinosteroid receptors in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001198441.1

Supported by ESTs:

NM_105791.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables UDP-glucose:glycoprotein glucosyltransferase activity	IEA Inferred from Electronic Annotation more info
enables glycosyltransferase activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within anthocyanin-containing compound metabolic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within plant-type hypersensitive response	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in protein glycosylation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within response to salicylic acid	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in endoplasmic reticulum	HDA more info	PubMed
located_in mitochondrion	HDA more info	PubMed

General protein information

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Preferred Names: EMS-MUTAGENIZED BRI1 SUPPRESSOR 1

NP_001185370.1

EMS-mutagenized bri1 suppressor 1 (EBS1); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495), UDP-glucose:Glycoprotein Glucosyltransferase (InterPro:IPR009448).

NP_177278.3

EMS-mutagenized bri1 suppressor 1 (EBS1); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups, UDP-glucose:glycoprotein glucosyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: guard cell, callus; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495), UDP-glucose:Glycoprotein Glucosyltransferase (InterPro:IPR009448); Has 744 Blast hits to 676 proteins in 227 species: Archae - 0; Bacteria - 109; Metazoa - 278; Fungi - 168; Plants - 73; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

26841550..26851959

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001334490.1 → NP_001323059.1 EMS-MUTAGENIZED BRI1 SUPPRESSOR 1 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AVX3, A0A5S9WTJ1
NM_105791.5 → NP_177278.3 EMS-MUTAGENIZED BRI1 SUPPRESSOR 1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_177278.3

Status: REVIEWED

UniProtKB/Swiss-Prot

F4I8G1, Q0WL80

UniProtKB/TrEMBL

A0A178W3S9, A0A5S9WTJ1

Conserved Domains (6) summary

pfam06427
Location:1144 → 1247

UDP-g_GGTase; UDP-glucose:Glycoprotein Glucosyltransferase

pfam18400
Location:43 → 237

Thioredoxin_12; Thioredoxin-like domain

pfam18401
Location:320 → 453

Thioredoxin_13; Thioredoxin-like domain

pfam18402
Location:452 → 722

Thioredoxin_14; Thioredoxin-like domain

pfam18403
Location:734 → 983

Thioredoxin_15; Thioredoxin-like domain

pfam18404
Location:1301 → 1568

Glyco_transf_24; Glucosyltransferase 24
NM_001198441.1 → NP_001185370.1 EMS-MUTAGENIZED BRI1 SUPPRESSOR 1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001185370.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W3V2, A0A5S9WTJ1

Conserved Domains (2) summary

cd06432
Location:1302 → 1549

GT8_HUGT1_C_like; The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family

pfam06427
Location:31 → 1240

UDP-g_GGTase; UDP-glucose:Glycoprotein Glucosyltransferase