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    ARABIDILLO-2 ARABIDILLO-2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825206, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARABIDILLO-2
    Official Full Name
    ARABIDILLO-2
    Primary source
    TAIR:AT3G60350
    Locus tag
    AT3G60350
    See related
    Araport:AT3G60350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDILLO2; F-box Armadillo protein 2
    Summary
    ARABIDILLO-2 and its homolog, ARABIDILLO -1, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-2 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-2-overexpressing lines produce more lateral roots than wild-type seedlings.
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    Genomic context

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    See ARABIDILLO-2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (22306488..22311244, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene bZIP domain class transcription factor (DUF630 and DUF632) Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene H[+]-ATPase 7 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene embryo sac development arrest 14 Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Armadillo-related proteins promote lateral root development in Arabidopsis. Coates JC, et al. Proc Natl Acad Sci U S A, 2006 Jan 31. PMID 16434475, Free PMC Article
    2. ARABIDILLO proteins have a novel and conserved domain structure important for the regulation of their stability. Nibau C, et al. Plant Mol Biol, 2011 Jan. PMID 21052782
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340041.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lateral root development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within lateral root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARABIDILLO-2
    NP_001319805.1
    • ARABIDILLO-2 (ARABIDILLO-2); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARABIDILLO-1 (TAIR:AT2G44900.1); Has 10264 Blast hits to 5575 proteins in 291 species: Archae - 0; Bacteria - 64; Metazoa - 4302; Fungi - 778; Plants - 4057; Viruses - 0; Other Eukaryotes - 1063 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22306488..22311244 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115899.4 → NP_191594.1  ARABIDILLO-2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191594.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M224
      UniProtKB/TrEMBL
      A0A5S9XMH7, A0A654FJJ2
      Conserved Domains (5) summary
      cd09293
      Location:138 → 291
      AMN1; Antagonist of mitotic exit network protein 1
      cd00020
      Location:599 → 714
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00034
      Location:80 → 104
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:40 → 86
      F-box-like; F-box-like
      sd00043
      Location:603 → 628
      ARM; armadillo repeat [structural motif]

    2. NM_001340041.1 → NP_001319805.1  ARABIDILLO-2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M224
      UniProtKB/TrEMBL
      A0A5S9XMH7, A0A654FJJ2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M224.1

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