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    GID1B alpha/beta-Hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825476, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GID1B
    Official Full Name
    alpha/beta-Hydrolases superfamily protein
    Primary source
    TAIR:AT3G63010
    Locus tag
    AT3G63010
    See related
    Araport:AT3G63010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATGID1B; GA INSENSITIVE DWARF1B
    Summary
    Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.
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    Genomic context

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    See GID1B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (23289243..23291486)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tRNA-Ala Neighboring gene tRNA-Ala Neighboring gene hypothetical protein (DUF3049) Neighboring gene methyl-CPG-binding domain 4 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integrating circadian and gibberellin signaling in Arabidopsis: possible links between the circadian clock and the AtGID1 transcription. Marín-de la Rosa N, et al. Plant Signal Behav, 2011 Sep. PMID 21852756, Free PMC Article
    2. Loss of Arabidopsis thaliana Seed Dormancy is Associated with Increased Accumulation of the GID1 GA Hormone Receptors. Hauvermale AL, et al. Plant Cell Physiol, 2015 Sep. PMID 26136598
    3. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Gallego-Giraldo C, et al. Plant J, 2014 Sep. PMID 24961590, Free PMC Article
    4. Multiple loss-of-function of Arabidopsis gibberellin receptor AtGID1s completely shuts down a gibberellin signal. Iuchi S, et al. Plant J, 2007 Jun. PMID 17521411
    5. The roles of the GA receptors GID1a, GID1b, and GID1c in sly1-independent GA signaling. Hauvermale AL, et al. Plant Signal Behav, 2014. PMID 24521922, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Partial after-ripening resulted in increased GID1b, but not GID1a or GID1c mRNA levels.
      Title: Loss of Arabidopsis thaliana Seed Dormancy is Associated with Increased Accumulation of the GID1 GA Hormone Receptors.
    2. The stronger role of GID1b in non-proteolytic gibberellic acid signaling may result from the fact that GID1b has higher affinity for DELLA protein than GID1a and GID1c.
      Title: The roles of the GA receptors GID1a, GID1b, and GID1c in sly1-independent GA signaling.
    3. GID1A plays a major role during fruit-set, whereas GID1B and GID1C have partially redundant function with GID1A in seed development and pod elongation, respectively.
      Title: Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    4. Data propose a possible mechanism that might operate for the transcriptional control of GID1 expression by the circadian clock.
      Title: Integrating circadian and gibberellin signaling in Arabidopsis: possible links between the circadian clock and the AtGID1 transcription.
    5. GID1A, GID1B and GID1C play distinct roles during seed germination.
      Title: Members of the gibberellin receptor gene family GID1 (GIBBERELLIN INSENSITIVE DWARF1) play distinct roles during Lepidium sativum and Arabidopsis thaliana seed germination.
    6. DELLA degradation causing GA responses requires GA biosynthesis, three functionally redundant GA receptors GIBBERELLIN INSENSITIVE DWARF1 (GID1a, b, and c), and the SLEEPY1 (SLY1) F-box subunit of an SCF E3 ubiquitin ligase.
      Title: Proteolysis-independent downregulation of DELLA repression in Arabidopsis by the gibberellin receptor GIBBERELLIN INSENSITIVE DWARF1.
    7. The stamens of the double knockout mutant atgid1a atgid1b were significantly shorter than those of the wild-type, and this leads to low fertility.
      Title: Multiple loss-of-function of Arabidopsis gibberellin receptor AtGID1s completely shuts down a gibberellin signal.
    8. GID1a, GID1b, GID1c are the predominant GA receptors in regulating GA growth response in Arabidopsis. GA binding to GID1a promotes its interaction with DELLA proteins. [GID1b]
      Title: Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis.
    9. AtGID1a, AtGID1b and AtGID1c function as GA receptors in Arabidopsis.[AtGID1b]
      Title: Identification and characterization of Arabidopsis gibberellin receptors.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_116166.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within floral organ morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within gibberellin mediated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of gibberellic acid mediated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within raffinose family oligosaccharide biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to gibberellin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to gibberellin IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    alpha/beta-Hydrolases superfamily protein
    NP_191860.1
    • GA INSENSITIVE DWARF1B (GID1B); FUNCTIONS IN: hydrolase activity; INVOLVED IN: floral organ morphogenesis, raffinose family oligosaccharide biosynthetic process, positive regulation of gibberellic acid mediated signaling pathway, response to gibberellin stimulus, gibberellin mediated signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G27320.1); Has 9567 Blast hits to 9549 proteins in 1556 species: Archae - 107; Bacteria - 5744; Metazoa - 546; Fungi - 719; Plants - 1351; Viruses - 5; Other Eukaryotes - 1095 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23289243..23291486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116166.5 → NP_191860.1  alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191860.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WRW2, Q9LYC1
      UniProtKB/TrEMBL
      A0A178V9F0, A0A5S9XNI8
      Conserved Domains (1) summary
      pfam07859
      Location:109 → 322
      Abhydrolase_3; alpha/beta hydrolase fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYC1.1

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