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    DAU1 TRM32-like protein (DUF3741) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830266, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DAU1
    Official Full Name
    TRM32-like protein (DUF3741)
    Primary source
    TAIR:AT5G02390
    Locus tag
    AT5G02390
    See related
    Araport:AT5G02390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DUO1-activated unknown 1; T1E22.150; T1E22_150; TON1 Recruiting Motif 16; TRM16
    Summary
    Target promoter of the male germline-specific transcription factor DUO1.
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    Genomic context

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    See DAU1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (508577..512270, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene metallothionein 2B Neighboring gene tRNA-Lys Neighboring gene ncRNA Neighboring gene pol-like 2 Neighboring gene DIE2/ALG10 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The R2R3 MYB transcription factor DUO1 activates a male germline-specific regulon essential for sperm cell differentiation in Arabidopsis. Borg M, et al. Plant Cell, 2011 Feb. PMID 21285328, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001125683.2
    NM_001342654.1
    NM_120317.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen sperm cell differentiation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRM32-like protein (DUF3741)
    NP_001119155.1
    • Protein of unknown function (DUF3741); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001318458.1
    • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: GTP-binding protein Obg/CgtA (TAIR:AT1G07620.1); Has 4713 Blast hits to 3576 proteins in 331 species: Archae - 20; Bacteria - 252; Metazoa - 1533; Fungi - 380; Plants - 348; Viruses - 15; Other Eukaryotes - 2165 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      508577..512270 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342654.1 → NP_001318458.1  TRM32-like protein (DUF3741) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UM64, A0A5S9Y0P9, Q9LZ87
      Conserved Domains (2) summary
      pfam12552
      Location:263 → 310
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:665 → 825
      DUF4378; Domain of unknown function (DUF4378)

    2. NM_120317.3 → NP_195859.1  TRM32-like protein (DUF3741) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195859.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UM64, A0A5S9Y0P9, Q9LZ87
      Conserved Domains (2) summary
      pfam12552
      Location:263 → 310
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:665 → 825
      DUF4378; Domain of unknown function (DUF4378)

    3. NM_001125683.2 → NP_001119155.1  TRM32-like protein (DUF3741) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119155.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UM64, B3H571
      Conserved Domains (2) summary
      pfam12552
      Location:263 → 310
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:665 → 743
      DUF4378; Domain of unknown function (DUF4378)
    Nucleotide Protein
    Heading Accession and Version

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