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    XBAT33 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830618, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XBAT33
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT5G07270
    Locus tag
    AT5G07270
    See related
    Araport:AT5G07270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28J14.210; T28J14_210; XB3 ortholog 3 in Arabidopsis thaliana
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    Genomic context

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    See XBAT33 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (2280560..2283667)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene IQ-domain 24 Neighboring gene RHOMBOID-like protein 3 Neighboring gene START (StAR-related lipid-transfer) lipid-binding domain-containing protein Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. Stone SL, et al. Plant Physiol, 2005 Jan. PMID 15644464, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_120809.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_196344.2
    • XB3 ortholog 3 in Arabidopsis thaliana (XBAT33); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 53429 Blast hits to 23032 proteins in 965 species: Archae - 65; Bacteria - 4348; Metazoa - 27793; Fungi - 4781; Plants - 2636; Viruses - 380; Other Eukaryotes - 13426 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2280560..2283667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120809.5 → NP_196344.2  uncharacterized protein AT5G07270 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196344.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q4FE45, Q9LYN9
      UniProtKB/TrEMBL
      A0A178U6J8, A0A5S9Y2Z9, A0A7G2FAZ8
      Conserved Domains (4) summary
      sd00045
      Location:46 → 75
      ANK; ANK repeat [structural motif]
      cd00162
      Location:312 → 361
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      pfam12796
      Location:49 → 132
      Ank_2; Ankyrin repeats (3 copies)
      cl17238
      Location:311 → 363
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4FE45.1

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