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    TPS21 terpene synthase 21 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832461, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TPS21
    Official Full Name
    terpene synthase 21
    Primary source
    TAIR:AT5G23960
    Locus tag
    AT5G23960
    See related
    Araport:AT5G23960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTPS21; MZF18.16; MZF18_16; terpene synthase 21
    Summary
    Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.
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    Genomic context

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    See TPS21 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (8092901..8095341)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene pseudo Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene ferric reduction oxidase 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Floral and insect-induced volatile formation in Arabidopsis lyrata ssp. petraea, a perennial, outcrossing relative of A. thaliana. Abel C, et al. Planta, 2009 Jun. PMID 19322583, Free PMC Article
    2. Two sesquiterpene synthases are responsible for the complex mixture of sesquiterpenes emitted from Arabidopsis flowers. Tholl D, et al. Plant J, 2005 Jun. PMID 15918888
    3. Biosynthesis and emission of terpenoid volatiles from Arabidopsis flowers. Chen F, et al. Plant Cell, 2003 Feb. PMID 12566586, Free PMC Article
    4. Comparative transcriptome analysis of Arabidopsis thaliana infested by diamond back moth (Plutella xylostella) larvae reveals signatures of stress response, secondary metabolism, and signalling. Ehlting J, et al. BMC Genomics, 2008 Apr 9. PMID 18400103, Free PMC Article
    5. Arabidopsis MYC2 interacts with DELLA proteins in regulating sesquiterpene synthase gene expression. Hong GJ, et al. Plant Cell, 2012 Jun. PMID 22669881, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MYC2 directly binds to promoter of the sesquiterpene synthase gene TPS21
      Title: Arabidopsis MYC2 interacts with DELLA proteins in regulating sesquiterpene synthase gene expression.
    2. Data show that the enzyme activity of an herbivore-induced A. lyrata ssp. petraea terpene synthase with high similarity to A. thaliana TPS 21.
      Title: Floral and insect-induced volatile formation in Arabidopsis lyrata ssp. petraea, a perennial, outcrossing relative of A. thaliana.
    3. The florally expressed genes At5g23960 and At5g44630, are responsible for the formation of virtually all sesquiterpenes found in the Arabidopsis floral volatile blend.
      Title: Two sesquiterpene synthases are responsible for the complex mixture of sesquiterpenes emitted from Arabidopsis flowers.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_001203445.1
    NM_122301.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables (-)-E-beta-caryophyllene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables alpha-humulene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in diterpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to herbivore IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within sesquiterpene biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within sesquiterpenoid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    terpene synthase 21
    NP_001190374.1
    • terpene synthase 21 (TPS21); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14490.1).
    NP_197784.2
    • terpene synthase 21 (TPS21); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8092901..8095341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122301.4 → NP_197784.2  terpene synthase 21 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197784.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84UU4, Q84YI3, Q9FLW5
      UniProtKB/TrEMBL
      A0A654G3M3
      Conserved Domains (1) summary
      cd00684
      Location:7 → 543
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1

    2. NM_001203445.1 → NP_001190374.1  terpene synthase 21 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190374.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3M3
      Conserved Domains (1) summary
      cd00684
      Location:7 → 541
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84UU4.2

    Gene LinkOut

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