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    TFIIB zinc-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833919, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TFIIB zinc-binding protein
    Primary source
    TAIR:AT5G39230
    Locus tag
    AT5G39230
    See related
    Araport:AT5G39230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K3K3.13; K3K3_13
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (15709474..15709925)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene chlororespiratory reduction 7 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TFIIB zinc-binding protein
    NP_198739.1
    • TFIIB zinc-binding protein; FUNCTIONS IN: transcription regulator activity, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription, transcription initiation; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Zinc finger, TFIIB-type (InterPro:IPR013137); BEST Arabidopsis thaliana protein match is: Cyclin-like family protein (TAIR:AT3G29380.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15709474..15709925
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123285.1 → NP_198739.1  TFIIB zinc-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198739.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G6C3, Q3E7U7
      Conserved Domains (1) summary
      pfam08271
      Location:4 → 39
      TF_Zn_Ribbon; TFIIB zinc-binding
    Nucleotide Protein
    Heading Accession and Version

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