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    MBD13 methyl-CPG-binding domain protein 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835299, updated on 18-Sep-2024

    Summary

    Official Symbol
    MBD13
    Official Full Name
    methyl-CPG-binding domain protein 13
    Primary source
    TAIR:AT5G52230
    Locus tag
    AT5G52230
    See related
    Araport:AT5G52230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17P19.13; F17P19_13; methyl-CPG-binding domain protein 13
    Summary
    Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
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    Genomic context

    See MBD13 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (21207784..21212072, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GTP-binding protein 1 Neighboring gene chromosome transmission fidelity-like protein Neighboring gene membrane steroid binding protein 1 Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001203591.2
    NM_001344990.1
    NM_124602.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables methyl-CpG binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    methyl-CPG-binding domain protein 13
    NP_001190520.1
    • methyl-CPG-binding domain protein 13 (MBD13); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739).
    NP_200036.1
    • methyl-CPG-binding domain protein 13 (MBD13); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 6509 Blast hits to 4943 proteins in 596 species: Archae - 10; Bacteria - 822; Metazoa - 2790; Fungi - 554; Plants - 296; Viruses - 34; Other Eukaryotes - 2003 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21207784..21212072 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124602.4NP_200036.1  methyl-CPG-binding domain protein 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200036.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WLQ6, Q8L791, Q9LTJ8
      UniProtKB/TrEMBL
      A0A178UJM8, A0A5S9YEF0
    2. NM_001344990.1NP_001331264.1  methyl-CPG-binding domain protein 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WLQ6, Q8L791, Q9LTJ8
      UniProtKB/TrEMBL
      A0A178UJM8, A0A5S9YEF0
    3. NM_001203591.2NP_001190520.1  methyl-CPG-binding domain protein 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190520.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WLQ6, Q8L791, Q9LTJ8
      UniProtKB/TrEMBL
      A0A178UJM8, A0A5S9YEF0