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    putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836240, updated on 18-Sep-2024

    Summary

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    Official Full Name
    putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein
    Primary source
    TAIR:AT5G61190
    Locus tag
    AT5G61190
    See related
    Araport:AT5G61190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAF19.19; MAF19_19
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (24615253..24620053)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S19e family protein Neighboring gene Putative endonuclease or glycosyl hydrolase Neighboring gene myosin heavy chain-like protein Neighboring gene soluble N-ethylmaleimide-sensitive factor adaptor protein 33 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_125512.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein
    NP_200927.3
    • putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 3024 Blast hits to 2428 proteins in 238 species: Archae - 10; Bacteria - 118; Metazoa - 1187; Fungi - 140; Plants - 554; Viruses - 10; Other Eukaryotes - 1005 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24615253..24620053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345448.1 → NP_001331005.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCI5

    2. NM_001345449.1 → NP_001331004.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMT0, A0A1P8BCJ1

    3. NM_001345451.1 → NP_001331007.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCJ7, A0A5S9YH54

    4. NM_001345450.1 → NP_001331003.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCI5

    5. NM_001345452.1 → NP_001331009.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCJ8, A0A5S9YH54, A0A654GD43
      Conserved Domains (5) summary
      smart00451
      Location:294 → 328
      ZnF_U1; U1-like zinc finger
      COG5246
      Location:451 → 586
      PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
      sd00020
      Location:299 → 321
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd10910
      Location:12 → 136
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
      pfam12874
      Location:370 → 392
      zf-met; Zinc-finger of C2H2 type

    6. NM_001345453.1 → NP_001331006.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMT0, A0A1P8BCJ1

    7. NM_001345454.1 → NP_001331008.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKV1, A0A1P8BCK2

    8. NM_001345455.1 → NP_001331002.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCL2, A0A5S9YH54

    9. NM_001345446.1 → NP_001331000.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCH6, Q9FNP6

    10. NM_001345447.1 → NP_001331001.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKV1, A0A1P8BCI2

    11. NM_125512.3 → NP_200927.3  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200927.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K209, Q9FNP6
      Conserved Domains (5) summary
      smart00451
      Location:294 → 328
      ZnF_U1; U1-like zinc finger
      cd10910
      Location:12 → 153
      limkain_b1_N_like; N-terminal LabA-like domain of limkain b1 and similar proteins
      COG5246
      Location:412 → 578
      PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
      sd00020
      Location:299 → 321
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:370 → 392
      zf-met; Zinc-finger of C2H2 type
    Nucleotide Protein
    Heading Accession and Version

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