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    AI480526 expressed sequence AI480526 [ Mus musculus (house mouse) ]

    Gene ID: 100675, updated on 9-Dec-2024

    Summary

    Official Symbol
    AI480526provided by MGI
    Official Full Name
    expressed sequence AI480526provided by MGI
    Primary source
    MGI:MGI:2140910
    See related
    Ensembl:ENSMUSG00000090086 AllianceGenome:MGI:2140910
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human LINC01089 (long intergenic non-protein coding RNA 1089). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 20.2), CNS E14 (RPKM 19.2) and 28 other tissues See more
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    Genomic context

    See AI480526 in Genome Data Viewer
    Location:
    5 F; 5 62.79 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (123271786..123279151, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 6444 Neighboring gene transmembrane protein 120B Neighboring gene STARR-seq mESC enhancer starr_14311 Neighboring gene STARR-seq mESC enhancer starr_14312 Neighboring gene STARR-positive B cell enhancer ABC_E10349 Neighboring gene STARR-positive B cell enhancer ABC_E4788 Neighboring gene STARR-positive B cell enhancer ABC_E6377 Neighboring gene ras homolog family member F (in filopodia) Neighboring gene STARR-positive B cell enhancer ABC_E1060 Neighboring gene STARR-positive B cell enhancer ABC_E8079 Neighboring gene STARR-seq mESC enhancer starr_14314 Neighboring gene STARR-positive B cell enhancer ABC_E2763 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:123591600-123591709 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:123599408-123599706 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:123599709-123599818 Neighboring gene STARR-positive B cell enhancer ABC_E6378 Neighboring gene SET domain containing 1B Neighboring gene STARR-seq mESC enhancer starr_14316 Neighboring gene predicted gene, 54284 Neighboring gene 4-hydroxyphenylpyruvic acid dioxygenase

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_000071.7 Chromosome 5 Reference GRCm39 C57BL/6J

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Clone Names

    • AC158114.3

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187831.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC158114
      Related
      ENSMUST00000287281.1
    2. NR_187832.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC158114
      Related
      ENSMUST00000287282.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      123271786..123279151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)