Ap5b1 adaptor related protein complex 5 subunit beta 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ap5b1provided by RGD
Official Full Name: adaptor related protein complex 5 subunit beta 1provided by RGD
Primary source: RGD:1562657
See related: EnsemblRapid:ENSRNOG00000026114 AllianceGenome:RGD:1562657
Gene type: protein coding
RefSeq status: INFERRED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Beta5; RGD1562657
Summary: Predicted to be involved in endosomal transport. Predicted to be part of AP-type membrane coat adaptor complex. Orthologous to human AP5B1 (adaptor related protein complex 5 subunit beta 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Kidney (RPKM 37.4), Thymus (RPKM 29.6) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q43

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (212305612..212309643)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (202876272..202880303)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (220948318..220952349)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in endosomal transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in endosomal transport	IEA Inferred from Electronic Annotation more info
involved_in endosomal transport	ISO Inferred from Sequence Orthology more info
involved_in endosomal transport	ISS Inferred from Sequence or Structural Similarity more info
involved_in protein transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of AP-type membrane coat adaptor complex	IBA Inferred from Biological aspect of Ancestor more info
part_of AP-type membrane coat adaptor complex	ISO Inferred from Sequence Orthology more info
part_of AP-type membrane coat adaptor complex	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: AP-5 complex subunit beta-1

Names: adapter-related protein complex 5 beta subunit; adaptor-related protein complex 5 beta subunit; adaptor-related protein complex 5, beta 1 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.