U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tmem209 transmembrane protein 209 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 312200, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Tmem209provided by RGD
    Official Full Name
    transmembrane protein 209provided by RGD
    Primary source
    RGD:1309682
    See related
    EnsemblRapid:ENSRNOG00000028219 AllianceGenome:RGD:1309682
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309682
    Summary
    Predicted to be located in Golgi apparatus and nuclear envelope. Predicted to be active in membrane. Orthologous to human TMEM209 (transmembrane protein 209). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 98.0), Testes (RPKM 88.2) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tmem209 in Genome Data Viewer
    Location:
    4q22
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (60070346..60096039, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (59102943..59128636, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (57796337..57823283, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene kelch domain containing 10 Neighboring gene uncharacterized LOC134486570 Neighboring gene uncharacterized LOC108350685 Neighboring gene serine-rich single-pass membrane protein 1 Neighboring gene uncharacterized LOC120102251 Neighboring gene carboxypeptidase A2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane protein 209

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014055.2 → NP_001014077.1  transmembrane protein 209 isoform 1

      See identical proteins and their annotated locations for NP_001014077.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/Swiss-Prot
      Q68FR5
      UniProtKB/TrEMBL
      A0A8L2QHN8, A6IEG4
      Related
      ENSRNOP00000031535.6, ENSRNOT00000032772.7
      Conserved Domains (1) summary
      pfam09786
      Location:5 → 560
      CytochromB561_N; Cytochrome B561, N terminal

    2. NM_001395029.1 → NP_001381958.1  transmembrane protein 209 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8L2QHN8
      Related
      ENSRNOP00000109840.1, ENSRNOT00000143370.1
      Conserved Domains (1) summary
      pfam09786
      Location:4 → 559
      CytochromB561_N; Cytochrome B561, N terminal

    3. NM_001395030.1 → NP_001381959.1  transmembrane protein 209 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8L2QHN8
      Related
      ENSRNOP00000084579.2, ENSRNOT00000116575.2
      Conserved Domains (1) summary
      pfam09786
      Location:4 → 559
      CytochromB561_N; Cytochrome B561, N terminal

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      60070346..60096039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039107516.2 → XP_038963444.2  transmembrane protein 209 isoform X2

      UniProtKB/TrEMBL
      A0A8L2QHN8

    2. XM_063285986.1 → XP_063142056.1  transmembrane protein 209 isoform X1

      UniProtKB/TrEMBL
      A0A8L2QHN8
      Related
      ENSRNOP00000073944.3, ENSRNOT00000091255.3
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q68FR5.1 GenPept UniProtKB/Swiss-Prot:Q68FR5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools