U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Zc3h6 zinc finger CCCH type containing 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311415, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Zc3h6provided by RGD
    Official Full Name
    zinc finger CCCH type containing 6provided by RGD
    Primary source
    RGD:1311061
    See related
    EnsemblRapid:ENSRNOG00000026277 AllianceGenome:RGD:1311061
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Zc3hdc6
    Summary
    Predicted to enable RNA binding activity and metal ion binding activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be active in nucleus. Orthologous to human ZC3H6 (zinc finger CCCH-type containing 6). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Zc3h6 in Genome Data Viewer
    Location:
    3q36
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (136656116..136717560)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (116203466..116254186)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (121497709..121554131)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH type containing 8 Neighboring gene methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, pseudogene 1 Neighboring gene vinculin/alpha-catenin family member 1 Neighboring gene tubulin tyrosine ligase Neighboring gene RNA polymerase I subunit B Neighboring gene uncharacterized LOC134486439

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger CCCH domain-containing protein 6
    Names
    zinc finger CCCH type domain containing 6

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107772.1 → NP_001101242.1  zinc finger CCCH domain-containing protein 6

      See identical proteins and their annotated locations for NP_001101242.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473949
      UniProtKB/TrEMBL
      A6HQ43, F1LTU5
      Related
      ENSRNOP00000024322.6, ENSRNOT00000024322.7
      Conserved Domains (1) summary
      smart00356
      Location:300 → 324
      ZnF_C3H1; zinc finger

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      136656116..136717560
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008762235.4 → XP_008760457.1  zinc finger CCCH domain-containing protein 6 isoform X2

      See identical proteins and their annotated locations for XP_008760457.1

      Conserved Domains (2) summary
      pfam15663
      Location:274 → 334
      zf-CCCH_3; Zinc-finger containing family
      pfam18345
      Location:281 → 299
      zf_CCCH_4; Zinc finger domain

    2. XM_063283758.1 → XP_063139828.1  zinc finger CCCH domain-containing protein 6 isoform X1

      UniProtKB/TrEMBL
      A6HQ43, F1LTU5

    3. XM_063283756.1 → XP_063139826.1  zinc finger CCCH domain-containing protein 6 isoform X1

      UniProtKB/TrEMBL
      A6HQ43, F1LTU5

    4. XM_063283759.1 → XP_063139829.1  zinc finger CCCH domain-containing protein 6 isoform X1

      UniProtKB/TrEMBL
      A6HQ43, F1LTU5

    5. XM_063283760.1 → XP_063139830.1  zinc finger CCCH domain-containing protein 6 isoform X1

      UniProtKB/TrEMBL
      A6HQ43, F1LTU5

    6. XM_063283761.1 → XP_063139831.1  zinc finger CCCH domain-containing protein 6 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools