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    Dof-type zinc finger DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824409, updated on 18-Sep-2024

    Summary

    Official Full Name
    Dof-type zinc finger DNA-binding family protein
    Primary source
    TAIR:AT3G52440
    Locus tag
    AT3G52440
    See related
    Araport:AT3G52440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (19435122..19436299)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene outer envelope membrane protein 7 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene plant U-box 22 Neighboring gene hydroxyproline-rich glycoprotein family protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_115104.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Dof-type zinc finger DNA-binding family protein
    NP_190812.1
    • Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT1G21340.1); Has 1099 Blast hits to 1090 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1092; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19435122..19436299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339574.1NP_001327531.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XK43, C0SVE3
    2. NM_115104.2NP_190812.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190812.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SVC5
      UniProtKB/TrEMBL
      A0A178VGL3, A0A5S9XK43
      Conserved Domains (1) summary
      pfam02701
      Location:2780
      zf-Dof; Dof domain, zinc finger