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    hpRNA:CR33940 hairpin RNA:CR33940 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 3771790, updated on 28-Oct-2024

    Summary

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    Official Symbol
    hpRNA:CR33940provided by FlyBase
    Official Full Name
    hairpin RNA:CR33940provided by FlyBase
    Primary source
    FLYBASE:FBgn0062928
    Locus tag
    Dmel_CR33940
    See related
    AllianceGenome:FB:FBgn0062928
    Gene type
    ncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:RH57193; CR33940; Dmel\CR33940; esi-4.1; hp-pncr009; pncr009; pncr009:3L
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    Genomic context

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    See hpRNA:CR33940 in Genome Data Viewer
    Location:
    76B4-76B4; 3-45 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (19486745..19488439, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (19479846..19481539, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene hairpin RNA:CR32207 Neighboring gene pseudo Neighboring gene brivido-1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA-based immunity terminates viral infection in adult Drosophila in the absence of viral suppression of RNA interference: characterization of viral small interfering RNA populations in wild-type and mutant flies. Han YH, et al. J Virol, 2011 Dec. PMID 21957285, Free PMC Article
    2. [LTR retrotransposons as a source of promoters in the Drosophila genome]. Makunin IV, et al. Genetika, 2010 Sep. PMID 21061618
    3. Two-step mechanism for selective incorporation of lncRNA into a chromatin modifier. Müller M, et al. Nucleic Acids Res, 2020 Jul 27. PMID 32510132, Free PMC Article
    4. Processing of Drosophila endo-siRNAs depends on a specific Loquacious isoform. Zhou R, et al. RNA, 2009 Oct. PMID 19635780, Free PMC Article
    5. Protein degradation of Lsd1 is mediated by Bre1 yet opposed by Lsd1-interacting lncRNAs during fly follicle development. Lin CT, et al. iScience, 2024 May 17. PMID 38655201, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • alternate names: putative noncoding RNA 009:3L
    • putative non-coding RNA; hpRNA:CR33940-RD; Dmel\hpRNA:CR33940-RD; CR33940-RD; Dmel\CR33940-RD
    • putative non-coding RNA; hpRNA:CR33940-RE; Dmel\hpRNA:CR33940-RE; CR33940-RE; Dmel\CR33940-RE
    • putative non-coding RNA; hpRNA:CR33940-RF; Dmel\hpRNA:CR33940-RF; CR33940-RF; Dmel\CR33940-RF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      19486745..19488439 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_156768.1 RNA Sequence

      Status: REVIEWED

    2. NR_156769.1 RNA Sequence

      Status: REVIEWED

    3. NR_156770.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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