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    CG3788 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37644, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG3788provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034800
    Locus tag
    Dmel_CG3788
    See related
    AllianceGenome:FB:FBgn0034800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG3788
    Summary
    Predicted to enable uridine phosphorylase activity. Predicted to be involved in uridine catabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in adult head and spermatozoon. Orthologous to human UPP1 (uridine phosphorylase 1) and UPP2 (uridine phosphorylase 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG3788 in Genome Data Viewer
    Location:
    59B6-59B6; 2-101 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (22932035..22934077, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (18819558..18821600, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Nucleoporin 214kD Neighboring gene Receptor expression enhancing protein A Neighboring gene CCHC-type zinc finger nucleic acid binding protein Neighboring gene uncharacterized protein Neighboring gene Gustatory receptor-like Holozoa

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes. Phanse S, et al. Data Brief, 2016 Mar. PMID 26870755, Free PMC Article
    2. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
    3. Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes. López-Varea A, et al. G3 (Bethesda), 2021 Dec 8. PMID 34599810, Free PMC Article
    4. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article
    5. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables uridine phosphorylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables uridine phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleoside metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in nucleotide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in uridine catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG3788-PA
    CG3788-PB
    NP_001188991.1
    NP_611738.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      22932035..22934077 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202062.2 → NP_001188991.1  uncharacterized protein Dmel_CG3788, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188991.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8T8S2, Q9W1X2
      Conserved Domains (1) summary
      TIGR01719
      Location:57 → 345
      euk_UDPppase; uridine phosphorylase

    2. NM_137894.3 → NP_611738.1  uncharacterized protein Dmel_CG3788, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611738.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8T8S2, Q9W1X2
      Related
      FBpp0071904
      Conserved Domains (1) summary
      TIGR01719
      Location:57 → 345
      euk_UDPppase; uridine phosphorylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8T8S2 Q8T8S2

    Gene LinkOut

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