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    CG40498 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 3354890, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG40498provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0069969
    Locus tag
    Dmel_CG40498
    See related
    AllianceGenome:FB:FBgn0069969
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG40498
    Summary
    Is expressed in adult head. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG40498 in Genome Data Viewer
    Location:
    41A1-41A1; 2-55 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (924636..951252, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2RHet NW_001848856.1 (51350..77966, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Dpr-interacting protein lambda Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR41257 Neighboring gene rolled

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cytogenetic and molecular characterization of heterochromatin gene models in Drosophila melanogaster. Rossi F, et al. Genetics, 2007 Feb. PMID 17110485, Free PMC Article
    2. Comparative Genomic Analyses Provide New Insights into the Evolutionary Dynamics of Heterochromatin in Drosophila. Caizzi R, et al. PLoS Genet, 2016 Aug. PMID 27513559, Free PMC Article
    3. Nociceptor-Enriched Genes Required for Normal Thermal Nociception. Honjo K, et al. Cell Rep, 2016 Jul 12. PMID 27346357, Free PMC Article
    4. circRNA biogenesis competes with pre-mRNA splicing. Ashwal-Fluss R, et al. Mol Cell, 2014 Oct 2. PMID 25242144
    5. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    • Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG40498-PF
    CG40498-PG
    CG40498-PI
    CG40498-PJ
    CG40498-PK

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      924636..951252 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001110874.3 → NP_001104344.2  uncharacterized protein Dmel_CG40498, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001104344.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8Y4V5

    2. NM_001110872.5 → NP_001104342.3  uncharacterized protein Dmel_CG40498, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001104342.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8Y4V5

    3. NM_001015119.3 → NP_001015119.2  uncharacterized protein Dmel_CG40498, isoform K [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001015119.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8Y4V5

    4. NM_001300705.1 → NP_001287634.1  uncharacterized protein Dmel_CG40498, isoform J [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287634.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8Y4V5

    5. NM_001110873.3 → NP_001104343.2  uncharacterized protein Dmel_CG40498, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001104343.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8Y4V5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A8Y4V5 A8Y4V5

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