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    LAC6 laccase 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819269, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LAC6
    Official Full Name
    laccase 6
    Primary source
    TAIR:AT2G46570
    Locus tag
    AT2G46570
    See related
    Araport:AT2G46570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13A10.10; laccase 6
    Summary
    putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).
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    Genomic context

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    See LAC6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (19126272..19129069)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Pyridoxamine 5'-phosphate oxidase family protein Neighboring gene Dof-type zinc finger DNA-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydroquinone:oxygen oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    laccase 6
    NP_182180.1
    • laccase 6 (LAC6); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: shoot, hypocotyl, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 9565 Blast hits to 7786 proteins in 1266 species: Archae - 28; Bacteria - 3648; Metazoa - 481; Fungi - 3482; Plants - 1556; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19126272..19129069
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130222.2 → NP_182180.1  laccase 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182180.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RY28, Q9ZPY2
      UniProtKB/TrEMBL
      A0A5S9X814, A0A654FD18
      Conserved Domains (4) summary
      cd13849
      Location:34 → 150
      CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
      cd13875
      Location:165 → 312
      CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
      cd13897
      Location:413 → 552
      CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
      TIGR03389
      Location:29 → 569
      laccase; laccase, plant

    2. NM_001337204.1 → NP_001324819.1  laccase 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1C0, A0A5S9X814, A0A654FD18
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZPY2.1

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