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    CYC1BAT Cyclin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830502, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CYC1BAT
    Official Full Name
    Cyclin family protein
    Primary source
    TAIR:AT5G06150
    Locus tag
    AT5G06150
    See related
    Araport:AT5G06150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CYCB1;2; cyclin B 1;2; CYCLIN B1;2; MBL20.2; MBL20_2
    Summary
    Encodes a cyclin whose expression is reduced in response to high salt.
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    Genomic context

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    See CYC1BAT in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (1859279..1861703, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene chaperone protein dnaJ-like protein Neighboring gene sorting nexin 1 Neighboring gene splicing factor-like protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The anaphase-promoting complex initiates zygote division in Arabidopsis through degradation of cyclin B1. Guo L, et al. Plant J, 2016 Apr. PMID 26952278
    2. ATR and ATM play both distinct and additive roles in response to ionizing radiation. Culligan KM, et al. Plant J, 2006 Dec. PMID 17227549
    3. Arabidopsis anaphase-promoting complexes: multiple activators and wide range of substrates might keep APC perpetually busy. Fülöp K, et al. Cell Cycle, 2005 Aug. PMID 15970679
    4. Identification of kinase substrates by bimolecular complementation assays. Pusch S, et al. Plant J, 2012 Apr. PMID 22098373
    5. Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes. Boruc J, et al. Plant Physiol, 2010 Feb. PMID 20018602, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342857.1
    NM_120697.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic cell cycle phase transition IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to gamma radiation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cyclin family protein
    NP_196233.1
    • CYC1BAT; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN B1;3 (TAIR:AT3G11520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1859279..1861703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120697.3 → NP_196233.1  Cyclin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196233.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39067, Q9FG02
      UniProtKB/TrEMBL
      A0A178UP02, A0A5S9Y1V0, A0A654FYZ1
      Conserved Domains (2) summary
      cd20511
      Location:312 → 428
      CYCLIN_AtCycB-like_rpt2; second cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins
      cd20567
      Location:162 → 307
      CYCLIN_AtCycB-like_rpt1; first cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins

    2. NM_001342857.1 → NP_001332193.1  Cyclin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGB9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q39067.2

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