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    Uncharacterized protein family (UPF0016) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826992, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Uncharacterized protein family (UPF0016)
    Primary source
    TAIR:AT4G13590
    Locus tag
    AT4G13590
    See related
    Araport:AT4G13590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6G15.140; T6G15_140
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (7901216..7904042, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Disease resistance-responsive (dirigent-like protein) family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Carbohydrate-binding X8 domain superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chloroplast-localized BICAT proteins shape stromal calcium signals and are required for efficient photosynthesis. Frank J, et al. New Phytol, 2019 Jan. PMID 30169890
    2. The Plastid Envelope CHLOROPLAST MANGANESE TRANSPORTER1 Is Essential for Manganese Homeostasis in Arabidopsis. Eisenhut M, et al. Mol Plant, 2018 Jul 2. PMID 29734002
    3. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203789.1
    NM_117433.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion transmembrane transporter activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables manganese ion transmembrane transporter activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in calcium-mediated signaling IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within manganese ion transmembrane transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    colocalizes_with chloroplast envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast inner membrane HDA PubMed 

    General protein information

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    Preferred Names
    Uncharacterized protein family (UPF0016)
    NP_001190718.1
    • Uncharacterized protein family (UPF0016); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G64150.1).
    NP_193095.2
    • Uncharacterized protein family (UPF0016); LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G64150.1); Has 1766 Blast hits to 1641 proteins in 653 species: Archae - 19; Bacteria - 1010; Metazoa - 162; Fungi - 161; Plants - 209; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7901216..7904042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117433.5 → NP_193095.2  Uncharacterized protein family (UPF0016) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193095.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9T0H9
      UniProtKB/TrEMBL
      A0A178V1F4, A0A5S9XS96, A0A654FP23, A0A7G2F271
      Conserved Domains (1) summary
      COG2119
      Location:146 → 359
      Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]

    2. NM_001203789.1 → NP_001190718.1  Uncharacterized protein family (UPF0016) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190718.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XS96, A0A654FP23, A0A7G2F271, F4JT38
      Conserved Domains (2) summary
      COG2119
      Location:146 → 359
      Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
      pfam01169
      Location:282 → 351
      UPF0016; Uncharacterized protein family UPF0016
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9T0H9.2

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