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    zinc ion binding/nucleic acid binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819322, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc ion binding/nucleic acid binding protein
    Primary source
    TAIR:AT2G47090
    Locus tag
    AT2G47090
    See related
    Araport:AT2G47090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14M4.8
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (19341225..19344343, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene squamosa promoter binding protein-like 1 Neighboring gene tRNA-Ala Neighboring gene ncRNA Neighboring gene ubiquitin 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ubiquitin E3 ligase SR1 modulates the submergence response by degrading phosphorylated WRKY33 in Arabidopsis. Liu B, et al. Plant Cell, 2021 Jul 2. PMID 33616649, Free PMC Article
    2. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202838.1
    NM_001337246.1
    NM_001337247.1
    NM_001337248.1
    NM_130277.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in rescue of stalled ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to flooding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc ion binding/nucleic acid binding protein
    NP_001189767.1
    • zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G62240.1).
    NP_566094.2
    • zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G62240.1); Has 6997 Blast hits to 1745 proteins in 389 species: Archae - 0; Bacteria - 1326; Metazoa - 1009; Fungi - 441; Plants - 119; Viruses - 26; Other Eukaryotes - 4076 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19341225..19344343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130277.3 → NP_566094.2  zinc ion binding/nucleic acid binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566094.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0X9, A0A654F3Z5, F4IK69
      Conserved Domains (1) summary
      COG5236
      Location:5 → 283
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

    2. NM_001202838.1 → NP_001189767.1  zinc ion binding/nucleic acid binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189767.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0X9, F4IK68
      Conserved Domains (1) summary
      pfam13920
      Location:2 → 48
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    3. NM_001337248.1 → NP_001324630.1  zinc ion binding/nucleic acid binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0X9, A0A1P8B0R1

    4. NM_001337246.1 → NP_001324631.1  zinc ion binding/nucleic acid binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0X9, A0A1P8B0M9

    5. NM_001337247.1 → NP_001324629.1  zinc ion binding/nucleic acid binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0X9, A0A1P8B0P0, A0A7G2EHZ1
    Nucleotide Protein
    Heading Accession and Version

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