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    XH domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816148, updated on 18-Sep-2024

    Summary

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    Official Full Name
    XH domain-containing protein
    Primary source
    TAIR:AT2G16490
    Locus tag
    AT2G16490
    See related
    Araport:AT2G16490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1P15.13; F1P15_13
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (7146000..7147981, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene coiled-coil 90B-like protein (DUF1640) Neighboring gene GW repeat- and PHD finger-containing protein NERD Neighboring gene arginine decarboxylase 1 Neighboring gene maternally expressed family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    XH domain-containing protein
    NP_179242.1
    • XH domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G15910.1); Has 169 Blast hits to 163 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7146000..7147981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127203.1 → NP_179242.1  XH domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179242.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9SI65
      Conserved Domains (1) summary
      pfam03469
      Location:76 → 146
      XH; XH domain
    Nucleotide Protein
    Heading Accession and Version

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