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    FLA16 FASCICLIN-like arabinogalactan protein 16 precursor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818159, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FLA16
    Official Full Name
    FASCICLIN-like arabinogalactan protein 16 precursor
    Primary source
    TAIR:AT2G35860
    Locus tag
    AT2G35860
    See related
    Araport:AT2G35860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11F19.23; F11F19_23; FASCICLIN-like arabinogalactan protein 16 precursor
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    Genomic context

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    See FLA16 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (15059763..15062122)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ureidoglycolate hydrolase Neighboring gene ureidoglycolate hydrolase Neighboring gene Sucrose-6F-phosphate phosphohydrolase family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene TPX2 (targeting protein for Xklp2) protein family Neighboring gene ncRNA Neighboring gene calcium-dependent protein kinase 25

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactome analysis reveals versatile functions of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 in RNA processing within the nucleus and cytoplasm. Kim MH, et al. Cell Stress Chaperones, 2013 Jul. PMID 23334891, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_179922.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FASCICLIN-like arabinogalactan protein 16 precursor
    NP_850253.1
    • FASCICLIN-like arabinogalactan protein 16 precursor (FLA16); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 15 precursor (TAIR:AT3G52370.1); Has 1005 Blast hits to 970 proteins in 256 species: Archae - 17; Bacteria - 426; Metazoa - 148; Fungi - 43; Plants - 238; Viruses - 1; Other Eukaryotes - 132 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15059763..15062122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179922.2 → NP_850253.1  FASCICLIN-like arabinogalactan protein 16 precursor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850253.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWC5, Q9SJ64
      UniProtKB/TrEMBL
      A0A178VR39, A0A5S9X4A7
      Conserved Domains (3) summary
      smart00554
      Location:298 → 403
      FAS1; Four repeated domains in the Fasciclin I family of proteins, present in many other contexts
      pfam02469
      Location:46 → 175
      Fasciclin; Fasciclin domain
      cl02663
      Location:252 → 331
      Fasciclin; Fasciclin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RWC5.1

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