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    glycosyl hydrolase family 35 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814940, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glycosyl hydrolase family 35 protein
    Primary source
    TAIR:AT2G04060
    Locus tag
    AT2G04060
    See related
    Araport:AT2G04060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3L12.16; F3L12_16
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (1342137..1345164, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene MATE efflux family protein Neighboring gene miscRNA Neighboring gene beta-galactosidase-like protein Neighboring gene glycine-rich protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase family 35 protein
    NP_178493.1
    • glycosyl hydrolase family 35 protein; FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 15 (TAIR:AT1G31740.1); Has 587 Blast hits to 558 proteins in 54 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 0; Plants - 572; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1342137..1345164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126445.1 → NP_178493.1  glycosyl hydrolase family 35 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178493.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WX05, Q8S8A7
      Conserved Domains (2) summary
      PLN03059
      Location:1 → 316
      PLN03059; beta-galactosidase; Provisional
      cl07893
      Location:23 → 67
      AmyAc_family; Alpha amylase catalytic domain family
    Nucleotide Protein
    Heading Accession and Version

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