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    RNA-binding ASCH domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821284, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding ASCH domain protein
    Primary source
    TAIR:AT3G03320
    Locus tag
    AT3G03320
    See related
    Araport:AT3G03320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T21P5.26; T21P5_26
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (781715..783464)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene dicer-like 2 Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene lecithin:cholesterol acyltransferase 3 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene LUC7 related protein Neighboring gene cold-regulated protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111203.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding ASCH domain protein
    NP_566202.1
    • RNA-binding ASCH domain protein; CONTAINS InterPro DOMAIN/s: ProFAR isomerase-like (InterPro:IPR010759), ASCH domain (InterPro:IPR007374); BEST Arabidopsis thaliana protein match is: RNA-binding ASCH domain protein (TAIR:AT2G43465.1); Has 111 Blast hits to 111 proteins in 31 species: Archae - 41; Bacteria - 13; Metazoa - 2; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      781715..783464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111203.2 → NP_566202.1  RNA-binding ASCH domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566202.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F3P9, A0A7G2EF85, Q9SRN6
      Conserved Domains (1) summary
      cd06555
      Location:107 → 210
      ASCH_PF0470_like; ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to ...
    Nucleotide Protein
    Heading Accession and Version

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