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    Ribosomal protein L4/L1 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820120, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein L4/L1 family
    Primary source
    TAIR:AT3G09630
    Locus tag
    AT3G09630
    See related
    Araport:AT3G09630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (2953693..2955748)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene ascorbate peroxidase 2 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene minichromosome maintenance 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Auxin-mediated ribosomal biogenesis regulates vacuolar trafficking in Arabidopsis. Rosado A, et al. Plant Cell, 2010 Jan. PMID 20061553, Free PMC Article
    2. The plasmodesmal protein PDLP1 localises to haustoria-associated membranes during downy mildew infection and regulates callose deposition. Caillaud MC, et al. PLoS Pathog, 2014 Oct. PMID 25393742, Free PMC Article
    3. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    4. The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. Swatek KN, et al. J Proteome Res, 2011 Sep 2. PMID 21766784
    5. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035586.1
    NM_111797.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in nucleolus HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plasmodesma HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L4/L1 family
    NP_001030663.1
    • Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT5G02870.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_187574.1
    • Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 9 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT5G02870.1); Has 1142 Blast hits to 1141 proteins in 405 species: Archae - 316; Bacteria - 17; Metazoa - 269; Fungi - 177; Plants - 117; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2953693..2955748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111797.3 → NP_187574.1  Ribosomal protein L4/L1 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187574.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SF40
      UniProtKB/TrEMBL
      A0A178VDX8, A0A5S9XAM5, Q8LA93
      Conserved Domains (1) summary
      PLN00185
      Location:2 → 406
      PLN00185; 60S ribosomal protein L4-1; Provisional

    2. NM_001035586.1 → NP_001030663.1  Ribosomal protein L4/L1 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030663.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q2V3X4, Q8LA93
      Conserved Domains (3) summary
      PLN00185
      Location:2 → 405
      PLN00185; 60S ribosomal protein L4-1; Provisional
      pfam14374
      Location:281 → 352
      Ribos_L4_asso_C; 60S ribosomal protein L4 C-terminal domain
      cl00325
      Location:10 → 271
      Ribosomal_L4; Ribosomal protein L4/L1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SF40.1

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