U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    amino-terminal region of chorein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821620, updated on 18-Sep-2024

    Summary

    Official Full Name
    amino-terminal region of chorein
    Primary source
    TAIR:AT3G20720
    Locus tag
    AT3G20720
    See related
    Araport:AT3G20720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 3
    Exon count:
    20
    Sequence:
    Chromosome: 3; NC_003074.8 (7239896..7247030)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene F-box family protein Neighboring gene PPR superfamily protein Neighboring gene ncRNA Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001203014.2
    NM_112963.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    amino-terminal region of chorein
    NP_001189943.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.
    NP_188708.4
    • unknown protein; Has 184 Blast hits to 181 proteins in 66 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7239896..7247030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203014.2NP_001189943.1  amino-terminal region of chorein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189943.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJA9, A0A384LL86, A0A7G2EJW7, Q84R14
      Conserved Domains (2) summary
      pfam12624
      Location:591
      Chorein_N; N-terminal region of Chorein or VPS13
      pfam16908
      Location:157294
      VPS13; Vacuolar sorting-associated protein 13, N-terminal
    2. NM_112963.5NP_188708.4  amino-terminal region of chorein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188708.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EJW7, F4JES7
      Conserved Domains (1) summary
      pfam12624
      Location:291
      Chorein_N; N-terminal region of Chorein or VPS13