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    Peptidase family M48 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822330, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Peptidase family M48 family protein
    Primary source
    TAIR:AT3G27110
    Locus tag
    AT3G27110
    See related
    Araport:AT3G27110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (9997808..10000230)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene transcription/mRNA export factor Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Protein phosphatase 2C family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functions and substrates of plastoglobule-localized metallopeptidase PGM48. Bhuiyan NH, et al. Plant Signal Behav, 2017 Jun 3. PMID 28534654, Free PMC Article
    2. The Plastoglobule-Localized Metallopeptidase PGM48 Is a Positive Regulator of Senescence in Arabidopsis thaliana. Bhuiyan NH, et al. Plant Cell, 2016 Dec. PMID 27895226, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001338855.1
    NM_001338856.1
    NM_001338857.1
    NM_113625.4
    NM_180309.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in leaf senescence IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in regulation of leaf senescence IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    colocalizes_with chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Peptidase family M48 family protein
    NP_566808.1
    • Peptidase family M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 2654 Blast hits to 2654 proteins in 909 species: Archae - 247; Bacteria - 2042; Metazoa - 0; Fungi - 12; Plants - 34; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).
    NP_850640.1
    • Peptidase family M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 2654 Blast hits to 2654 proteins in 909 species: Archae - 247; Bacteria - 2042; Metazoa - 0; Fungi - 12; Plants - 34; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9997808..10000230
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113625.4 → NP_566808.1  Peptidase family M48 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566808.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LE96, Q9LSC4
      UniProtKB/TrEMBL
      A0A5S9XG24, A0A654FGH7
      Conserved Domains (1) summary
      cd07325
      Location:116 → 321
      M48_Ste24p_like; M48 Ste24 endopeptidase-like, integral membrane metallopeptidase

    2. NM_180309.3 → NP_850640.1  Peptidase family M48 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850640.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LE96, Q9LSC4
      UniProtKB/TrEMBL
      A0A5S9XG24, A0A654FGH7
      Conserved Domains (1) summary
      cd07325
      Location:116 → 321
      M48_Ste24p_like; M48 Ste24 endopeptidase-like, integral membrane metallopeptidase

    3. NM_001338855.1 → NP_001325724.1  Peptidase family M48 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM41

    4. NM_001338856.1 → NP_001325723.1  Peptidase family M48 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM40

    5. NM_001338857.1 → NP_001325722.1  Peptidase family M48 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFN4, A0A1I9LM39, A0A384KEQ8, A0A654FGH7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LSC4.1

    Gene LinkOut

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