U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    initiator tRNA phosphoribosyl transferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818652, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    initiator tRNA phosphoribosyl transferase family protein
    Primary source
    TAIR:AT2G40570
    Locus tag
    AT2G40570
    See related
    Araport:AT2G40570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2P4.8; T2P4_8
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (16940822..16943515)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene potassium transporter 2 Neighboring gene E2F target protein 1 (ETG1) Neighboring gene Protein kinase superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene Ribosomal protein S26e family protein Neighboring gene appr-1-p processing enzyme family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001036442.1
    NM_129619.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables tRNA adenosine(64)-2'-O-ribosylphosphate transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in charged-tRNA amino acid modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    initiator tRNA phosphoribosyl transferase family protein
    NP_001031519.1
    • initiator tRNA phosphoribosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring pentosyl groups; INVOLVED IN: regulation of translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiator tRNA phosphoribosyl transferase (InterPro:IPR007306), tRNA A64-2'-O-ribosylphosphate transferase, RIT1 (InterPro:IPR016519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_181589.3
    • initiator tRNA phosphoribosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring pentosyl groups, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, regulation of translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiator tRNA phosphoribosyl transferase (InterPro:IPR007306), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), tRNA A64-2'-O-ribosylphosphate transferase, RIT1 (InterPro:IPR016519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16940822..16943515
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336847.1 → NP_001325110.1  initiator tRNA phosphoribosyl transferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2A5

    2. NM_129619.5 → NP_181589.3  initiator tRNA phosphoribosyl transferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181589.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VP24, A0A5S9X5V2, Q7Y230
      Conserved Domains (2) summary
      pfam04179
      Location:403 → 512
      Init_tRNA_PT; Rit1 DUSP-like domain
      pfam17184
      Location:23 → 309
      Rit1_C; Rit1 N-terminal domain

    3. NM_001036442.1 → NP_001031519.1  initiator tRNA phosphoribosyl transferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031519.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4II10, O22878
      Conserved Domains (1) summary
      pfam04179
      Location:23 → 447
      Init_tRNA_PT; Initiator tRNA phosphoribosyl transferase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.