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    pre-mRNA-splicing factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824759, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pre-mRNA-splicing factor
    Primary source
    TAIR:AT3G55930
    Locus tag
    AT3G55930
    See related
    Araport:AT3G55930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (20745382..20746265, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Yippee family putative zinc-binding protein Neighboring gene F-box family protein Neighboring gene ADP-ribosylation factor GTPase-activating protein Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene pre-mRNA-splicing factor Neighboring gene Phosphoinositide-specific phospholipase C family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor
    NP_191152.2
    • Pre-mRNA-splicing factor 3; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: Pre-mRNA-splicing factor 3 (TAIR:AT1G28060.1); Has 549 Blast hits to 518 proteins in 205 species: Archae - 0; Bacteria - 10; Metazoa - 155; Fungi - 156; Plants - 71; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20745382..20746265 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115451.2 → NP_191152.2  pre-mRNA-splicing factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XL69, A0A654FH89, Q1PEF1
      Conserved Domains (2) summary
      pfam06544
      Location:148 → 267
      DUF1115; Protein of unknown function (DUF1115)
      pfam08572
      Location:18 → 121
      PRP3; pre-mRNA processing factor 3 (PRP3)
    Nucleotide Protein
    Heading Accession and Version

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