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    flocculation protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818582, updated on 18-Sep-2024

    Summary

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    Official Full Name
    flocculation protein
    Primary source
    TAIR:AT2G39950
    Locus tag
    AT2G39950
    See related
    Araport:AT2G39950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28M21.11; T28M21_11
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (16676542..16680503, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene isoamylase 1 Neighboring gene ncRNA Neighboring gene RNI-like superfamily protein Neighboring gene Microsomal signal peptidase 25 kDa subunit (SPC25) Neighboring gene Mitochondrial substrate carrier family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084557.5
    NM_001336809.1
    NM_001336810.1
    NM_001336811.1
    NM_001336812.1
    NM_001336813.1
    NM_001336814.1
    NM_001336815.1
    NM_129553.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    flocculation protein
    NP_001078026.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 941 Blast hits to 229 proteins in 79 species: Archae - 0; Bacteria - 8; Metazoa - 89; Fungi - 54; Plants - 41; Viruses - 0; Other Eukaryotes - 749 (source: NCBI BLink).
    NP_181524.1
    • unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16676542..16680503 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129553.3 → NP_181524.1  flocculation protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181524.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X5M6, A0A654F5Q5, A0A7G2EHV8, O04198

    2. NM_001336813.1 → NP_001324673.1  flocculation protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0S2, A0A7G2EER7

    3. NM_001336809.1 → NP_001324675.1  flocculation protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0S2, A0A7G2EER7

    4. NM_001336815.1 → NP_001324677.1  flocculation protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPL0, F4IG26

    5. NM_001084557.5 → NP_001078026.1  flocculation protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078026.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPL0, F4IG26

    6. NM_001336812.1 → NP_001324674.1  flocculation protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0S2, A0A7G2EER7

    7. NM_001336811.1 → NP_001324671.1  flocculation protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0S2, A0A7G2EER7

    8. NM_001336810.1 → NP_001324672.1  flocculation protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0S2, A0A7G2EER7

    9. NM_001336814.1 → NP_001324676.1  flocculation protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0S2, A0A7G2EER7
    Nucleotide Protein
    Heading Accession and Version

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