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    SAC3A SAC3/GANP/Nin1/mts3/eIF-3 p25 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818519, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SAC3A
    Official Full Name
    SAC3/GANP/Nin1/mts3/eIF-3 p25 family
    Primary source
    TAIR:AT2G39340
    Locus tag
    AT2G39340
    See related
    Araport:AT2G39340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSAC3A; T16B24.2; T16B24_2; yeast Sac3 homolog A
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    Genomic context

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    See SAC3A in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (16423541..16430108)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Cysteine proteinases superfamily protein Neighboring gene jacalin-related lectin 23 Neighboring gene ncRNA Neighboring gene ABC-2 type transporter family protein Neighboring gene ncRNA Neighboring gene F-box/associated interaction domain protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PRP4KA, a Putative Spliceosomal Protein Kinase, Is Important for Alternative Splicing and Development in Arabidopsis thaliana. Kanno T, et al. Genetics, 2018 Dec. PMID 30297453, Free PMC Article
    2. Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin. Lu Q, et al. Plant J, 2010 Jan. PMID 19843313
    3. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Analysis of RNA-sequencing data from prp4ka and sac3a mutants identified widespread and partially overlapping perturbations in alternative splicing in the two mutants
      Title: PRP4KA, a Putative Spliceosomal Protein Kinase, Is Important for Alternative Splicing and Development in Arabidopsis thaliana.
    2. Data identified SAC3 as a component of nuclear pore complexes.
      Title: Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_129491.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within alternative mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SAC3/GANP/Nin1/mts3/eIF-3 p25 family
    NP_181466.2
    • SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16423541..16430108
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129491.5 → NP_181466.2  SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181466.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IUY8, O80947, Q56W50
      UniProtKB/TrEMBL
      A0A654FAT3
      Conserved Domains (1) summary
      pfam03399
      Location:739 → 932
      SAC3_GANP; SAC3/GANP/Nin1/mts3/eIF-3 p25 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IUY8.1

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