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    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819222, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    Primary source
    TAIR:AT2G46150
    Locus tag
    AT2G46150
    See related
    Araport:AT2G46150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T3F17.20
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (18961283..18962423)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 43 Neighboring gene Late embryogenesis abundant protein Neighboring gene RING/U-box superfamily protein Neighboring gene Reticulon family protein Neighboring gene golgin Putative 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
    2. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_130177.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    NP_182138.1
    • Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G64065.1); Has 262 Blast hits to 261 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 258; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18961283..18962423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130177.3 → NP_182138.1  Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182138.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VY75, A0A654FCX4, A0A7G2EKD1, O82354
      Conserved Domains (1) summary
      PLN03160
      Location:1 → 221
      PLN03160; uncharacterized protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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