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    VND1 vascular related NAC-domain protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816318, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VND1
    Official Full Name
    vascular related NAC-domain protein 1
    Primary source
    TAIR:AT2G18060
    Locus tag
    AT2G18060
    See related
    Araport:AT2G18060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ANAC037; Arabidopsis NAC domain containing protein 37; T27K22.7; T27K22_7; vascular related NAC-domain protein 1
    Summary
    Encodes a NAC-domain transcription factor that is expressed in developing vessels and protoxylem. Along with other members of this family, VND1 appears to regulate the development of genes required for secondary cell wall biosynthesis.
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    Genomic context

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    See VND1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (7847967..7851606, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene histone H1-3 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Serine carboxypeptidase S28 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Developmental steps in acquiring competence for shoot development in Arabidopsis tissue culture. Che P, et al. Planta, 2007 Oct. PMID 17581762
    2. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Tan TT, et al. Plant Physiol, 2018 Jan. PMID 29133368, Free PMC Article
    3. Arabidopsis NAC domain proteins, VND1 to VND5, are transcriptional regulators of secondary wall biosynthesis in vessels. Zhou J, et al. PLoS One, 2014. PMID 25148240, Free PMC Article
    4. Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots. Yamaguchi M, et al. Plant J, 2008 Aug. PMID 18445131
    5. VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis. Yamaguchi M, et al. Plant Cell, 2010 Apr. PMID 20388856, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001335579.1
    NM_001335580.1
    NM_127362.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in callus formation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of secondary cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within xylem vessel member cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in xylem vessel member cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    vascular related NAC-domain protein 1
    NP_001318244.1
    • vascular related NAC-domain protein 1 (VND1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 76 (TAIR:AT4G36160.1); Has 3025 Blast hits to 3020 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3025; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7847967..7851606 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335579.1 → NP_001318244.1  vascular related NAC-domain protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SL41
      UniProtKB/TrEMBL
      A0A178VM15, A0A5S9WYW5
      Conserved Domains (1) summary
      pfam02365
      Location:10 → 137
      NAM; No apical meristem (NAM) protein

    2. NM_001335580.1 → NP_001323941.1  vascular related NAC-domain protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYI5
      Conserved Domains (1) summary
      pfam02365
      Location:24 → 49
      NAM; No apical meristem (NAM) protein

    3. NM_127362.2 → NP_179397.1  vascular related NAC-domain protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179397.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SL41
      UniProtKB/TrEMBL
      A0A178VM15, A0A5S9WYW5
      Conserved Domains (1) summary
      pfam02365
      Location:10 → 137
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SL41.1

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