CAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

Official Symbol: CAF1
Official Full Name: RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Primary source: TAIR:AT2G20020
Locus tag: AT2G20020
See related: Araport:AT2G20020
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATCAF1; T2G17.18; T2G17_18
Summary: Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns.
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Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

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KU70 and CAF-1 in Arabidopsis: Divergent roles in rDNA stability and telomere homeostasis.
Title: KU70 and CAF-1 in Arabidopsis: Divergent roles in rDNA stability and telomere homeostasis.
decrease in root meristem size in mutants is a consequence of defects in programmed cell death after UV-B exposure
Title: AtCAF-1 mutants show different DNA damage responses after ultraviolet-B than those activated by other genotoxic agents in leaves.
The mutant phenotype associated with T-DNA insertions in the Arabidopsis gene AtCAF1, encoding the ortholog of the maize chloroplast splicing factor CAF1, was examined.
Title: Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns.

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NM_127560.4

Function	Evidence Code	Pubs
enables mRNA binding	IDA Inferred from Direct Assay more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within Group II intron splicing	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info

NP_565462.1

CAF1; FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT1G23400.1); Has 330 Blast hits to 282 proteins in 47 species: Archae - 0; Bacteria - 32; Metazoa - 20; Fungi - 4; Plants - 265; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

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The following sections contain reference sequences that belong to a specific genome build. Explain