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    RIN13 RPM1 interacting protein 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816550, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RIN13
    Official Full Name
    RPM1 interacting protein 13
    Primary source
    TAIR:AT2G20310
    Locus tag
    AT2G20310
    See related
    Araport:AT2G20310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11A3.14; F11A3_14; RPM1 interacting protein 13
    Summary
    Encodes RPM1 Interacting Protein 13 (RIN13), a resistance protein interactor shown to positively enhance resistance function of RPM1.
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    Genomic context

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    See RIN13 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (8761180..8763372, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Protein kinase superfamily protein Neighboring gene DENN (AEX-3) domain-containing protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RIN13-mediated disease resistance depends on the SNC1-EDS1/PAD4 signaling pathway in Arabidopsis. Liu X, et al. J Exp Bot, 2020 Dec 31. PMID 32937656
    2. The nuclear localized RIN13 induces cell death through interacting with ARF1. Liu X, et al. Biochem Biophys Res Commun, 2020 Jun 18. PMID 32446355
    3. RIN13 is a positive regulator of the plant disease resistance protein RPM1. Al-Daoude A, et al. Plant Cell, 2005 Mar. PMID 15722472, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RIN13-mediated disease resistance depends on the SNC1-EDS1/PAD4 signaling pathway in Arabidopsis.
      Title: RIN13-mediated disease resistance depends on the SNC1-EDS1/PAD4 signaling pathway in Arabidopsis.
    2. The nuclear localized RIN13 induces cell death through interacting with ARF1.
      Title: The nuclear localized RIN13 induces cell death through interacting with ARF1.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_127590.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of plant-type hypersensitive response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plant-type hypersensitive response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RPM1 interacting protein 13
    NP_179621.1
    • RPM1 interacting protein 13 (RIN13); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28690.1); Has 124 Blast hits to 118 proteins in 30 species: Archae - 2; Bacteria - 0; Metazoa - 13; Fungi - 2; Plants - 98; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8761180..8763372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127590.6 → NP_179621.1  RPM1 interacting protein 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179621.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SK71
      UniProtKB/TrEMBL
      A0A5S9WZY6, A0A654EUE8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SK71.1

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