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    Adaptor protein complex AP-1, gamma subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842301, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Adaptor protein complex AP-1, gamma subunit
    Primary source
    TAIR:AT1G60070
    Locus tag
    AT1G60070
    See related
    Araport:AT1G60070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2K10.12; T2K10_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    19
    Sequence:
    Chromosome: 1; NC_003070.9 (22142604..22149527, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Serine/threonine-protein kinase WNK (With No Lysine)-like protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis adaptor protein 1G is critical for pollen development. Feng C, et al. J Integr Plant Biol, 2017 Sep. PMID 28544342
    2. Trans-Golgi network-located AP1 gamma adaptins mediate dileucine motif-directed vacuolar targeting in Arabidopsis. Wang X, et al. Plant Cell, 2014 Oct. PMID 25351491, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. essential for pollen development
      Title: Arabidopsis adaptor protein 1G is critical for pollen development.
    2. Data show that AP1 gamma adaptins localize to the trans-Golgi network (TGN), and suggest that the AP1 complex on the TGN mediates tonoplast targeting of membrane proteins with the dileucine motif.
      Title: Trans-Golgi network-located AP1 gamma adaptins mediate dileucine motif-directed vacuolar targeting in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001198341.1
    NM_104699.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of AP-1 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Adaptor protein complex AP-1, gamma subunit
    NP_001185270.1
    • Adaptor protein complex AP-1, gamma subunit; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, Golgi apparatus part, Golgi apparatus, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-1, gamma subunit (InterPro:IPR017107), Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin adaptor, gamma-adaptin, appendage (InterPro:IPR008153), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: gamma-adaptin 1 (TAIR:AT1G23900.2).
    NP_176215.2
    • Adaptor protein complex AP-1, gamma subunit; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, Golgi apparatus part, Golgi apparatus, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-1, gamma subunit (InterPro:IPR017107), Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin adaptor, gamma-adaptin, appendage (InterPro:IPR008153), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: gamma-adaptin 1 (TAIR:AT1G23900.2); Has 3502 Blast hits to 3444 proteins in 304 species: Archae - 0; Bacteria - 8; Metazoa - 1543; Fungi - 893; Plants - 386; Viruses - 0; Other Eukaryotes - 672 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22142604..22149527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198341.1 → NP_001185270.1  Adaptor protein complex AP-1, gamma subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185270.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WR45, F4IEP9
      Conserved Domains (2) summary
      smart00809
      Location:751 → 895
      Alpha_adaptinC2; Adaptin C-terminal domain
      pfam01602
      Location:26 → 580
      Adaptin_N; Adaptin N terminal region

    2. NM_104699.3 → NP_176215.2  Adaptor protein complex AP-1, gamma subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176215.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WSK2, Q9ZUI6
      UniProtKB/TrEMBL
      A0A5S9WR45
      Conserved Domains (2) summary
      smart00809
      Location:751 → 859
      Alpha_adaptinC2; Adaptin C-terminal domain
      pfam01602
      Location:26 → 580
      Adaptin_N; Adaptin N terminal region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZUI6.2

    Gene LinkOut

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