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    NHL domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838999, updated on 18-Sep-2024

    Summary

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    Official Full Name
    NHL domain-containing protein
    Primary source
    TAIR:AT1G23880
    Locus tag
    AT1G23880
    See related
    Araport:AT1G23880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23E23.5; T23E23_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (8435657..8438811)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RS-containing zinc finger protein 21 Neighboring gene trehalose-phosphatase/synthase 9 Neighboring gene NHL domain-containing protein Neighboring gene gamma-adaptin 1 Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332623.1
    NM_102236.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    NHL domain-containing protein
    NP_173800.2
    • NHL domain-containing protein; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G70280.2); Has 2830 Blast hits to 1270 proteins in 217 species: Archae - 77; Bacteria - 1235; Metazoa - 81; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 1241 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8435657..8438811
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102236.3 → NP_173800.2  NHL domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173800.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VTZ5, A0A654ENA6, Q8S9K1
      Conserved Domains (2) summary
      cd05819
      Location:147 → 189
      NHL; NHL repeat [structural motif]
      cl18310
      Location:147 → 288
      NHL; NHL repeat unit of beta-propeller proteins

    2. NM_001332623.1 → NP_001321768.1  NHL domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARX0, A0A5S9VTZ5, A0A654ENA6
    Nucleotide Protein
    Heading Accession and Version

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