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    Peptidase C15, pyroglutamyl peptidase I-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838952, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Peptidase C15, pyroglutamyl peptidase I-like protein
    Primary source
    TAIR:AT1G23440
    Locus tag
    AT1G23440
    See related
    Araport:AT1G23440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28C11.26; F28C11_26
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (8321611..8324497)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Plant-specific transcription factor YABBY family protein Neighboring gene ncRNA Neighboring gene PPR superfamily protein Neighboring gene Pectin lyase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332601.1
    NM_102193.4
    NM_202167.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables pyroglutamyl-peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Peptidase C15, pyroglutamyl peptidase I-like protein
    NP_173758.2
    • Peptidase C15, pyroglutamyl peptidase I-like; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I (InterPro:IPR000816), Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: Peptidase C15, pyroglutamyl peptidase I-like (TAIR:AT1G56700.2); Has 1716 Blast hits to 1713 proteins in 745 species: Archae - 108; Bacteria - 1355; Metazoa - 46; Fungi - 19; Plants - 100; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
    NP_973896.1
    • Peptidase C15, pyroglutamyl peptidase I-like; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: Peptidase C15, pyroglutamyl peptidase I-like (TAIR:AT1G56700.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8321611..8324497
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102193.4 → NP_173758.2  Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173758.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAN6, A0A654ECG0, Q9C5G6
      Conserved Domains (1) summary
      cd00501
      Location:9 → 215
      Peptidase_C15; Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from ...

    2. NM_202167.1 → NP_973896.1  Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973896.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I670
      Conserved Domains (1) summary
      cl00237
      Location:9 → 44
      Peptidase_C15; Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from ...

    3. NM_001332601.1 → NP_001320845.1  Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAN6, A0A654ECG0, Q9C5G6
      Conserved Domains (1) summary
      cd00501
      Location:9 → 215
      Peptidase_C15; Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from ...
    Nucleotide Protein
    Heading Accession and Version

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