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    F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837172, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/RNI-like superfamily protein
    Primary source
    TAIR:AT1G06630
    Locus tag
    AT1G06630
    See related
    Araport:AT1G06630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12K11.23; F12K11_23
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (2027606..2031388)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Ala Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene ncRNA Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001160840.2
    NM_001331636.1
    NM_001331639.1
    NM_001331640.1
    NM_001331641.1
    NM_001331642.1
    NM_100540.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box/RNI-like superfamily protein
    NP_001154312.1
    • F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1816 Blast hits to 1777 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1813; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_001318935.1
    • F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1830 Blast hits to 1791 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1827; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_563769.4
    • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2027606..2031388
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331637.1 → NP_001321698.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1L4Z1, F4IDP7, P0C2G0
      UniProtKB/TrEMBL
      A0A654E7M7
      Conserved Domains (2) summary
      sd00032
      Location:149 → 171
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:14 → 49
      F-box; F-box domain

    2. NM_001331638.1 → NP_001321697.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARQ2, A0A654E7M7

    3. NM_001160840.2 → NP_001154312.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154312.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1L4Z1, F4IDP7, P0C2G0
      UniProtKB/TrEMBL
      A0A654E7M7
      Conserved Domains (2) summary
      sd00032
      Location:149 → 171
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:14 → 49
      F-box; F-box domain

    4. NM_001331639.1 → NP_001321700.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1L4Z1, F4IDP7, P0C2G0
      UniProtKB/TrEMBL
      A0A654E7M7
      Conserved Domains (2) summary
      sd00032
      Location:149 → 171
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:14 → 49
      F-box; F-box domain

    5. NM_001331640.1 → NP_001321699.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARS0

    6. NM_001331641.1 → NP_001321696.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARQ2, A0A654E7M7

    7. NM_100540.7 → NP_563769.4  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563769.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654E7M7, F4IDP6
      Conserved Domains (2) summary
      sd00032
      Location:149 → 171
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:14 → 49
      F-box; F-box domain

    8. NM_001331642.1 → NP_001321695.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARR9, A0A654E7M7

    9. NM_001331636.1 → NP_001318935.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1L4Z1, F4IDP7, P0C2G0
      UniProtKB/TrEMBL
      A0A654E7M7
      Conserved Domains (2) summary
      sd00032
      Location:149 → 171
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:14 → 49
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C2G0.1

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