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    Plant invertase/pectin methylesterase inhibitor superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842062, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant invertase/pectin methylesterase inhibitor superfamily protein
    Primary source
    TAIR:AT1G56100
    Locus tag
    AT1G56100
    See related
    Araport:AT1G56100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6H22.11; T6H22_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (20980369..20984115, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene interactor of constitutive active ROPs protein Neighboring gene Cyclophilin Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene NOP56-like pre RNA processing ribonucleoprotein Neighboring gene Leucine-rich repeat transmembrane protein kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001160958.2
    NM_001160959.1
    NM_104488.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pectinesterase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant invertase/pectin methylesterase inhibitor superfamily protein
    NP_001154430.1
    • Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT4G00872.1); Has 41 Blast hits to 41 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001154431.1
    • Plant invertase/pectin methylesterase inhibitor superfamily protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT4G00872.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_176006.1
    • Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT4G00872.1); Has 709 Blast hits to 557 proteins in 124 species: Archae - 2; Bacteria - 33; Metazoa - 218; Fungi - 65; Plants - 80; Viruses - 2; Other Eukaryotes - 309 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20980369..20984115 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104488.1 → NP_176006.1  Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176006.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I3J6
      Conserved Domains (1) summary
      cl04375
      Location:21 → 74
      PMEI_like; pectin methylesterase inhibitor and related proteins

    2. NM_001160958.2 → NP_001154430.1  Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154430.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WMB9, F4I3J7
      Conserved Domains (1) summary
      cd15797
      Location:21 → 170
      PMEI; Pectin methylesterase inhibitor

    3. NM_001160959.1 → NP_001154431.1  Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154431.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJF6, F4I3J8
      Conserved Domains (1) summary
      cl04375
      Location:43 → 141
      PMEI_like; pectin methylesterase inhibitor and related proteins
    Nucleotide Protein
    Heading Accession and Version

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